Hello!

Myself Anuj Srivastava, a graduate student (PhD Bioinformatics Candidate) in the Institute of Bioinformatics. I am working under the guidance of Dr. Russell L. Malmberg. My Broad research interests include evolutionary analysis of ncRNA secondary structures and developing a machine learning based approach for the identification of the same. Besides this, I analyze genomic/transcriptomic data obtained from different species using comparative genomics based methods to tackle questions of potential interest. I am part of RNA Informatics group and Gerogia Genomics Facility at UGA.


Courses


Courses in Fall 2007
  • STAT 6630 - Statistical BioInformatics I
  • BCMB 8210 - Computational Methods for BioInformatics I

  • Courses in Spring 2008
  • STAT 6640 - Statistical BioInformatics II
  • BCMB 8211 - Computational Methods for BioInformatics II

  • Courses in Fall 2008
  • BCMB 8140 - Advance Genomics and BioInformatics
  • BCMB 8120 - Advance topics in Gene Expression
  • CSCI 6490 - Algorithm for Computaional Biology

  • Courses in Spring 2009
  • GENE 8940 - Genome Analysis
  • MIBO 8270 - Organization and Evolution of Genomes

  • Courses in Fall 2009
  • BCMB 6010 - Biochemistry and Molecular Biology I

  • Courses in Spring 2010
  • CSCI 7010 - Java Programming
  • EHSC 8800 - Next Generation Genome sequencing Technologies

  • Publications

  • Anuj Srivastava , Xiaoyu Zhang, Sal LaMarca, Liming Cai and Russell L. Malmberg (2011), Patterns of Chromatin-Modifications Discriminate Different Genomic Features in Arabidopsis , PNAS, To be submitted.


  • Anuj Srivastava, Erika Lindquist, Michael Felder, Timothy I. Shaw, Gabor Szalai, Paul Vrana, Chin-Fu Chen, Julie L. Glenn, Christa Pennacchio, and Travis C. Glenn (2011), Peromyscus transcriptomics, Genome biology, To Be submitted.


  • Kevin Winker*, Anuj Srivastava*, Timothy I. Shaw, Kenneth L. Jones, and Travis C. Glenn (2011) Probing the genomics of adaptive divergence using comparative transcriptomics between two subspecies of songbird, Molecular Ecology, submitted.


  • Dent Earl, Keith Bradnam, ....., Anuj Srivastava ,....., Ian Korf, Benedict Paten, (2011), Assemblathon 1: A competitive assessment of de novo short read assembly methods, Genome research, doi: 10.1101/gr.126599.111. Full Paper


  • Anuj Srivastava, Liming Cai, Jan Mrazek, and Russell L. Malmberg, "Mutational Patterns in RNA Secondary Structure Evolution Examined in Three RNA Families". PLoS ONE, 6(6): e20484, doi:10.1371/journal.pone.0020484, 2011. Full Paper


  • Anuj Srivastava, Willie L. Rogers, Catherine M. Breton, Liming Cai and Russell L. Malmberg, "Transcriptome analysis of Sarracenia, an insectivororus plant". Oxford DNA Research, doi: 10.1093/dnares/dsr014, 2011. Full Paper


  • Jan Mrazek, Shaohua Xie, Xiangxue Guo, and Anuj Srivastava,"AIMIE: a web-based environment for detection and interpretation of significant sequence motifs in prokaryotic genomes". Bioinformatics 24, 1041-1048, 2008. Full Paper

  • * Authors equally contributed

    Posters

  • Anuj Srivastava, Liming Cai, and Russell L. Malmberg, "Phylogenetic Study of Three Bacterial RNA Secondary Structure", 13th Annual International Conference on Research in Computational Molecular Biology, Tucson, Arizona, USA, 2009. (Abstract)


  • Anuj Srivastava, Shaohua Xie, Xiangxue Guo and Jan Mrazek,"AIMIE: A Web-based Environment for Detection and Interpretations of Significant Sequence Motifs in Prokaryotic Genomes", 3rd Annual Computational & Systems biology Symposium, Univeristy of Georgia, Athens, USA, 2008.


  • Contact Information

    Anuj Srivastava, Ph.D. Candidate
    Institute of BioInformatics, University of Georgia
    Athens,GA 30602
    Email: firstname AT uga DOT edu